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openModeller Desktop Version 1.0.6 Released
posted by Satri
on Friday October 26, @02:25PM
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from the model-me-beautiful dept.
from the model-me-beautiful dept.
timlinux writes "We are very pleased to announce the immediate availability of openModeller Desktop 1.0.6 and openModeller library 0.5.2. The openModeller library is a spatial distribution modelling tool for predicting species distribution
(fundamental niche modelling). openModeller Desktop is a cross platform, user friendly
interface to the openModeller library. With openModellerDesktop you can create an experiment
consisting of one or more models. When you run the experiment, a model is computed that can
be used to predict the distribution of each taxon you have selected. The model is then used
to generate ('project') a probability distribution map. An embedded mapping component in
openModellerDesktop allows you to visualise the probability distribution map, and shows the
original occurrence points overlaid on top of the map. The software is free and open sourced.
Development of openModeller is funded by FAPESP (http://www.fapesp.br/)." Read more below for the rest of the announcement and the new features.
"This release introduces several new features including:
The release also includes numerous other enhancements, bug fixes and stability improvements.
openModeller Desktop is available in source form, and as binary executables for Microsoft Windows,
Mac OS X, and Ubuntu 7.10 GNU/Linux. All versions can be obtained from our download page.
As an open source project, we provide support for using openModeller via our mailing lists and bug tracker:
Known Issues:
-
- Improved mapping capabilities — you can now specify occurrence symbol size and
colour, and overlay a context layer (such as country boundaries) on your output map. - Experiments run in their own thread — this makes for a more responsive user interface
and you can look at completed models whilst the experiment is still running. - Web Service modelling improvements — improvement have been made to allow better job progress
reporting when running as a web sevice. - Absence modelling is now supported — previous versions of openModellerDesktop did not
handle absence data properly so absence modelling was not available. - GBIF Rest Data Fetcher (work sponsored by GBIF with our thanks!) — it is now possible to
retrieve occurrence data using the new GIF Rest query service. The data fetcher has also
had various cosmetic and useability improvements, and now functions as a wizard. - New algorithms — openModeller Desktop now ships with two new algorithms (Support Vector
Machines and Bioclim Score). - Thresholding tool — you can now compute 'hotspot' models showing the predicted species
count per cell by aggregating many model outputs into a single raster file. The threshold
tool can also be used for 'concensus' modelling where many algorithms are used for a single
species and all the resulting probability distribution maps are combined to provide a map
indicating where most algorithms are in agreement that a species will ocurr at a given cell. - Translation to Traditional Chinese
The release also includes numerous other enhancements, bug fixes and stability improvements.
openModeller Desktop is available in source form, and as binary executables for Microsoft Windows,
Mac OS X, and Ubuntu 7.10 GNU/Linux. All versions can be obtained from our download page.
As an open source project, we provide support for using openModeller via our mailing lists and bug tracker:
- For general enquiries subscribe to our users mailing list.
- For developer related enquiries subscribe to our separate developers list.
- If you think you have found a bug, please report it using our bug tracker. When reporting bugs, please include some contact information in case we need help with replicating your issue.
Known Issues:
- The threshold tool can crash with large datasets, this will be addressed in next release.
Related Stories
Application Domains: openModeller Desktop version 1.0.5 Released
[+]
timlinux writes "It is our great pleasure to announce the immediate availability of openModeller Desktop Version 1.0.5 openModeller is a generic framework for carrying out fundamental niche modelling experiments — typically used to predict species distribution given a set of environmental raster layers. The openModeller Desktop application builds on the openModeller library by providing a user friendly graphical user interface for carrying out niche modelling experiments. This release introduces several new features including improved reporting, automated retrieval of locality data from online databases such as GBIF, Mac OS X build, and many other enhancements. The release also includes numerous bug fixes and stability improvements. openModeller Desktop is available in source form, and as binary executables for Microsoft Windows, Mac OS X, and as a GNU/Linux distribution independent application bundle. All versions can be obtained from our download page. As an open source project, we provide support for using openModeller via our mailing lists and bug tracker. Visit our home page for more details."
Application Domains: Species Grids - a New SEDAC Data Release
[+]
The AGISRS list informs us of new species distribution grids data available. From the announcement: "NASA's Socioeconomic Data and Applications Center (SEDAC), based at CIESIN, has gridded nearly 12,000 species distribution maps which were originally in vector format (ESRI shapefile). The original data were developed by a consortium of conservation organizations including NatureServe, IUCN, Conservation International, and World Wildlife Fund-USA. To make these data more useful for modeling and for integration with socioeconomic and other data, SEDAC converted the entire collection of shapefiles to raster format.
This newly released Web site provides a search facility for quickly locating and downloading 1-kilometer (30 arc-second) resolution grids of selected species maps in GeoTIFF format. Data are available for global amphibian distributions, and for birds and mammals in the Americas. The Web site provides access to individual species distribution grids, along with family grids that show the density and distribution of species within a given family." Go to the website to learn more. Several related stories copied below.
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